Nasim Sanati

About

Senior Bioinformatics Software Engineer

A bit on my education and background... I fast-tracked my academic journey through a joint PSU-OHSU program, earning a BS in Computer Science and a Master’s in Bioinformatics & Computational Biomedicine in just five years. This unique experience gave me the invaluable opportunity to immerse myself in the realms of both computer science and Bioinformatics (Biology/Molecular Biology , Chemistry, Statistics, Algorithms/Programming) simultaneously, gaining insights from both disciplines and experiencing the best of both worlds.

I'm especially passionate about the potential of knowledge graphs to connect diverse datasets, uncover hidden patterns, and enable new discoveries in biomedical research.

Outside of work, you'll find me biking, gardening, exploring art and nature, or curled up with a good book. I cherish spending time with my daughter, whose curiosity and perspective inspires me every day.

CV

Education

MS. Biomedical Informatics and Computational Biomedicine

2014 - 2016

Oregon Health and Science University - DMICE Division of Bioinformatics & Computational Biomedicine

BS. Computer Science

2013 - 2015

Portland State University - Maseeh College of Engineering and Computer Science

Personal Project

D3.JS Weather App

https://wx7.app/

Professional Experience

Computational Biologist - Data Engineering + Management + Analysis

In a multi-institutional research environment

Jan 2024 - Current

OHSU Knight Cancer Institute @ Allison Creason's and Kyle Ellrott's Lab

Senior Research Software Engineer

Oct 2022 - Feb 2023

Genentech (Apex Systems) - Data Science and Statistical Computing team

Research Software Developer

Aug 2019 - Aug 2021

OHSU - Reactome

Bioinformatics Scientist

Feb 2019 - Aug 2019

Phylos Bioscience - Data Science team

Research Associate

Mar 2017 - May 2018

Sage Bionetworks - Computational Oncology team

GSOC Mentorship

BIOINFORMATICS RESOURCE: DESCARTES + REACTOME PATHWAYS

Systematic pathway activity feature extraction from Descartes single-cell data.

link to project

BIOLOGICAL PROCESSES FEATURE EXTRACTION (ML)

Gene markers' pathway embedding of the Human Reactome pathway hierarchy graph.

link to project